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Diagnostic performance of rapid antigen test for COVID-19 and the effect of viral load, sampling time, subject’s clinical and laboratory parameters on test accuracy
Faculty
Medicine
Year:
2021
Type of Publication:
ZU Hosted
Pages:
Authors:
Elshaymaa Ahmed Abdallah Abdelmegid
Staff Zu Site
Abstract In Staff Site
Journal:
Journal of Infection and Public Health: ELSEVIER SCIENCE LONDON
Volume:
Keywords :
Diagnostic performance , rapid antigen test , COVID-19
Abstract:
Background: Egypt was among the first 10 countries in Africa that experienced COVID-19 cases. The sudden surge in the number of cases is overwhelming the capacity of the national healthcare system, particularly in developing countries. Central to the containment of the ongoing pandemic is the availability of rapid and accurate diagnostic tests that could pinpoint patients at early disease stages. In the current study, we aimed to (1) Evaluate the diagnostic performance of the rapid antigen test (RAT) “StandardTMQCOVID-19 Ag” against reverse transcriptase quantitative real-time PCR (RT-qPCR) in eighty-three swabs collected from COVID-19 suspected individuals showing various demographic features, clinical and radiological findings. (2) Test whether measuring laboratory parameters in participant’s blood would enhance the predictive accuracy of RAT. (3) Identify the most important features that determine the results of both RAT and RT-qPCR. Methods: Diagnostic measurements (e.g. sensitivity, specificity, etc.) and receiver operating characteristic curve were used to assess the clinical performance of “Standard TMQ COVID-19 Ag”. We used the support vector machine (SVM) model to investigate whether measuring laboratory indices would enhance the accuracy of RAT. Moreover, a random forest classification model was used to determine the most important determinants of the results of RAT and RT-qPCR for COVID-19 diagnosis. Results: The sensitivity, specificity, and accuracy of RAT were 78.2, 64.2, and 75.9%, respectively. Samples with high viral load and those that were collected within one-week post-symptoms showed the highest sensitivity and accuracy. The SVM modeling showed that measuring laboratory indices did not enhance the predictive accuracy of RAT. Conclusion: “Standard TMQ COVID-19 Ag” should not be used alone for COVID-19 diagnosis due to its low diagnostic performance relative to the RT-qPCR. RAT is best used at the early disease stage and in patients with high viral load.
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Elshaymaa Ahmed Abdallah Abdelmegid, "Human leukocyte antigen-DRB1 polymorphism in childhood acute lymphoblastic leukemia", molecular and clinical oncology, 2014
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Elshaymaa Ahmed Abdallah Abdelmegid, "A new piece of an old puzzle: lack of association between C-Rel (rs13031237- rs842647) single nucleotide polymorphisms and non-segmental vitiligo", SpringerNature, 2018
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